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De novo phasing resolves haplotype sequences in complex plant genomes
de novo phasing haplotype-resolved assembly autopolyploid chromosomal rearrangement
2023/11/28
Genome phasing is a recently developed assembly method that separates heterozygous eukaryotic genomic regions and builds haplotype-resolved assemblies. Because differences between haplotypes are ignor...
学术报告：IIIandMe: An Algorithm for Chromosome-scale Haplotype Determination Using Genome-wide Variants of Three Haploid Reproductive Cells
Algorithm Chromosome-scale Haplotype Determination
2023/7/20
贾震宇教授，本科就读于武汉大学生命科学学院生物化学专业。2006年于加州大学河滨分校同时取得统计学硕士和遗传-基因组-生物信息联合学科博士。先后就职于加州大学尔湾分校病理系、阿克伦大学统计系和俄亥俄西北医科大学医学系，从事包括前列腺癌在内的多种疾病的研究以及在生物统计和生物信息学科的教学工作。现受聘为加州大学河滨分校植物科学系数量遗传学教授。贾老师目前的研究工作包括基因组选择方法在作物育种和癌症预...
SCR-22 of pollen-dominant S haplotype class is recessive to SCR-44 of pollen-recessive S haplotype class in Brassica rapa
SCR-22 pollen-dominant S haplotype SCR-44 Brassica rapa
2023/8/9
SCR/SP11 encodes the male determinant of recognition specificity of self-incompatibility (SI) in Brassica species and is sporophytically expressed in the anther tapetum. Based on dominance relationshi...
Linkage Disequilibrium and Haplotype Block Structure in Portuguese Holstein Cattle
single nucleotide polymorphism GWAS dairy cattle
2018/3/5
The objectives of this study were to estimate linkage disequilibrium (LD), describe and scan a haplotype block for
the presence of genes that may affect milk production traits in Portuguese Holstein ...
Strategies for haplotype-based association mapping in a complex pedigreed population
complex pedigree false positives
2015/6/23
In association mapping, haplotype-based methods are generally regarded to provide higher
power and increased precision than methods based on single markers. For haplotype-based association
mapping...
Haplotype inference and haplotype-based transmission disequilibrium test (Hap-TDT)
Haplotype inference Transmission Disequilibrium Test Haplotype-based TDT
2016/12/20
Haplotype inference and haplotype-based transmission disequilibrium test (Hap-TDT) .
Characterization of S haplotype in a new self-compatible Brassica rapa cultivar Dahuangyoucai
Brassica rapa L. gene expression M-locus protein kinase (MLPK) S-locus genes self-incompatibility
2014/2/24
The most important Brassica species, B. rapa, is naturally self-incompatible. Self-compatible mutants would be useful for dissecting the molecular mechanism of self-incompatibility (SI), a process tha...
EST-SNPs in bread wheat: discovery, validation, genotyping and haplotype structure
contigs DNA polymorphism DNA sequencing homoeologue sequence variants (HSVs) Triticum aestivum L.
2014/3/11
The present study involves discovery, validation and use of single-nucleotide polymorphisms (SNPs) in bread wheat utilizing 48 EST-contigs (individual contigs having 20-89 ESTs, derived from 2 to 11 d...