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Membrane-mediated protein-protein interaction: A Monte Carlo study
Membrane-mediated protein-protein interaction Monte Carlo study Biological Physics
2012/4/20
We investigate membrane-mediated interactions between transmembrane proteins using coarse-grained models. We compare the effective potential of mean force (PMF) between two proteins, which are always ...
McGenus: A Monte Carlo algorithm to predict RNA secondary structures with pseudoknots
McGenus Monte Carlo algorithm RNA secondary structures pseudoknots
2012/4/28
We present McGenus, an algorithm to predict RNA secondary structures with pseudoknots. The method is based on a classification of RNA structures according to their topological genus. McGenus can treat...
Efficient Monte Carlo Algorithm for Simulating Reversible Aggregation of Multisite Particles
Efficient Monte Carlo Algorithm Simulating Reversible Aggregation Multisite Particles
2010/11/15
We present an efficient and exact Monte Carlo algorithm to simulate reversible aggregation of particles with dedicated binding sites. This method introduces a novel data structure of dynamic bond tre...